• Characterization of vasskveite (water halibut) syndrome for automated detection 

      Ortega, Samuel; Ofstad, Ragni; Syed, Shaheen; Kranz, Mathias; Heia, Karsten; Anderssen, Kathryn Elizabeth (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-12-23)
      In recent years, cases of vasskveite (water halibut) syndrome in halibut have been increasing. At the moment, there exists no way to screen for the syndrome immediately after capture, which is problematic for both exporters and purchasers. In this article, we compared good quality halibut and halibut exhibiting the syndrome using a variety of techniques. Hyperspectral imaging was used to quantify ...
    • Diffusion tensor imaging for spatially-resolved characterization of muscle fiber structure in seafood 

      Anderssen, Kathryn Elizabeth; Kranz, Mathias; Syed, Shaheen; Stormo, Svein Kristian (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-01-08)
      The fiber structure of tissue in meat and seafood has a significant impact on their perceived quality. However, quantifiable description of muscle structure is challenging. We investigate diffusion tensor imaging (DTI) magnetic resonance imaging (MRI) as a method to quantitatively describe tissue structure. DTI measures the anisotropy of water molecule diffusion within muscle fibers. A pilot study ...
    • Diffusion tensor imaging for spatially-resolved characterization of muscle fiber structure in seafood 

      Anderssen, Kathryn Elizabeth; Kranz, Mathias; Syed, Shaheen; Stormo, Svein Kristian (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-01-08)
      The fiber structure of tissue in meat and seafood has a significant impact on their perceived quality. However, quantifiable description of muscle structure is challenging. We investigate diffusion tensor imaging (DTI) magnetic resonance imaging (MRI) as a method to quantitatively describe tissue structure. DTI measures the anisotropy of water molecule diffusion within muscle fibers. A pilot study ...
    • Magnetic resonance imaging for non-invasive measurement of plastic ingestion in marine wildlife 

      Anderssen, Kathryn Elizabeth; Gabrielsen, Geir W.; Kranz, Mathias; Collard, France (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-11-17)
      Monitoring plastic ingestion by marine wildlife is important for both characterizing the extent of plastic pollution in the environment and understanding its effect on species and ecosystems. Current methods to detect plastic in the digestive system of animals are slow and invasive, such that the number of animals that can be screened is limited. In this article, magnetic resonance imaging (MRI) ...
    • Predicting liquid loss of frozen and thawed cod from hyperspectral imaging 

      Anderssen, Kathryn Elizabeth; Stormo, Svein Kristian; Skåra, Torstein; Skjelvareid, Martin Hansen; Heia, Karsten (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-08-20)
      As the ability to appraise the quality of every fish in a delivery in a consistent, objective, and rapid manner has numerous advantages for both sellers and buyers, there has been much research into methods to achieve this. One possible proxy for quality assessment is liquid loss, which correlates with undesirable sensory attributes. This study evaluated whether hyperspectral imaging could predict ...
    • Quantification and mapping of tissue damage from freezing in cod by magnetic resonance imaging 

      Anderssen, Kathryn Elizabeth; Syed, Shaheen; Stormo, Svein Kristian (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-02-01)
      Freezing of fish is an important processing method that can extend the shelf life of the product but can also lead to significant damage to the tissue if performed incorrectly. In order to thoroughly evaluate different freezing protocols, a method to characterize the extent and distribution of damage from freezing is needed. Magnetic resonance imaging (MRI) was tested as a technique to map and ...
    • Quantitative at-line monitoring of enzymatic hydrolysis using benchtop diffusion nuclear magnetic resonance spectroscopy 

      McCarney, Evan R.; Kristoffersen, Kenneth Aase; Anderssen, Kathryn Elizabeth (Journal article; Tidsskriftartikkel; Peer reviewed, 2024-01-18)
      Benchtop diffusion nuclear magnetic resonance (NMR) spectroscopy was used to perform quantitative monitoring of enzymatic hydrolysis. The study aimed to test the feasibility of the technology to characterize enzymatic hydrolysis processes in real time. Diffusion ordered spectroscopy (DOSY) was used to measure the signal intensity and apparent self-diffusion constant of solubilized protein in ...
    • Weakly supervised semantic segmentation for MRI: exploring the advantages and disadvantages of class activation maps for biological image segmentation with soft boundaries 

      Syed, Shaheen; Anderssen, Kathryn Elizabeth; Stormo, Svein Kristian; Kranz, Mathias (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-02-13)
      Fully supervised semantic segmentation models require pixel-level annotations that are costly to obtain. As a remedy, weakly supervised semantic segmentation has been proposed, where image-level labels and class activation maps (CAM) can detect discriminative regions for specific class objects. In this paper, we evaluated several CAM methods applied to different convolutional neural networks (CNN) ...